Jonathan Karin

PhD researcher at the Mor Nitzan Lab, Hebrew University of Jerusalem. Computational biology & graph signal processing — linking topology to function in complex biological systems.

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Research Interests

Computational Biology

Graph Signal Processing

Graph Machine Learning

Complex Biological Systems

Publications

2024

Interpreting single-cell and spatial omics data using deep neural network training dynamics

J. Karin, R. Mintz, B. Raveh, M. Nitzan Nature Computational Science

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2023

scPrisma infers, filters and enhances topological signals in single-cell data using spectral template matching

J. Karin, Y. Bornfeld, M. Nitzan Nature Biotechnology

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2025

Enhancing swarms' durability to threats via graph signal processing and GNN-based generative modeling

J. Karin, Z. Piran, M. Nitzan Phys. Rev. E

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2021

Multirbp: multi-task neural network for protein-RNA binding prediction

J. Karin, H. Michel, Y. Orenstein ACM BCB 2021

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2024

Deep learning training dynamics analysis for single-cell data

J. Karin, R. Mintz Nature Computational Science

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